PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ZF-HD
Protein Properties Length: 301aa    MW: 32395.2 Da    PI: 9.0491
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010330genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.43.9e-3457112458
  ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                  v YkeClkNhAaslG+ha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr++e
    Cla010330  57 VSYKECLKNHAASLGAHALDGCGEFMPSPSATpTDPTSLKCAACGCHRNFHRRDPE 112
                  79*****************************99********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1757113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-2857111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.5E-3159110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.55759110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.97E-18187260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-29194261IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-27199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDLAAPAPIT TSSNNTKSPD ADSDTPTKIP PSSSLKSLPF TNGVLKRHHH RQPSVIVSYK  60
ECLKNHAASL GAHALDGCGE FMPSPSATPT DPTSLKCAAC GCHRNFHRRD PEDPISTLAI  120
NTAPTHVIEY QPHHRHHPPP PSLPGNRSPN SASPPPISSS YYPSAPHMLL ALSAGLSGRP  180
PENITQGNNS VLTVSPNTRK RFRTKFSNEQ KEKMLDFAER VGWKMQKRDE DLVRDFCNQV  240
GVERGVLKVW MHNNKNTMGK KPDSNGTTTA AAATAAVNNN EDGPDGGLHM HVGSNGSSSS  300
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-241982571675ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6838640.0LN683864.1 Cucumis melo genomic scaffold, unassembled_sequence31355.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011655994.11e-154PREDICTED: zinc-finger homeodomain protein 10-like
SwissprotQ9LXG03e-72ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0A0KSA41e-154A0A0A0KSA4_CUCSA; Uncharacterized protein
STRINGVIT_14s0108g00750.t012e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-62homeobox protein 34